{"id":200,"date":"2023-04-14T03:36:03","date_gmt":"2023-04-14T03:36:03","guid":{"rendered":"http:\/\/example.com\/?p=192"},"modified":"2023-04-14T03:36:03","modified_gmt":"2023-04-14T03:36:03","slug":"192-umap-read-the-docs","status":"publish","type":"post","link":"https:\/\/w2.geleleger.nl\/rhcuk-192-umap-read-the-docs-esknvp\/","title":{"rendered":"Umap Read The Docs"},"content":{"rendered":"<div class=\"387480d42754320bb6f0e83bf7886d44\" data-index=\"1\" style=\"float: none; margin:10px 0 10px 0; text-align:center;\">\n<script type=\"text\/javascript\">\r\n\tatOptions = {\r\n\t\t'key' : '4a1f1119f949a4af74d56b8a3af8b867',\r\n\t\t'format' : 'iframe',\r\n\t\t'height' : 250,\r\n\t\t'width' : 300,\r\n\t\t'params' : {}\r\n\t};\r\n\tdocument.write('<scr' + 'ipt type=\"text\/javascript\" src=\"http' + (location.protocol === 'https:' ? 's' : '') + ':\/\/bleedingofficecontagion.com\/4a1f1119f949a4af74d56b8a3af8b867\/invoke.js\"><\/scr' + 'ipt>');\r\n<\/script>\n<\/div>\n\n<p><strong>Umap Read The Docs<\/strong>. <strong>API Reference: UMAP API Guide. umap. See Geodjango doc for backend installation. Its Bismap extension identifies mappability of the bisulfite converted genome (methylome). the mappability of a genome for a given read length k. Performance Comparison of Dimension Reduction Implementations. First, it generates all possible k-mers of the genome. Note: for Ubuntu follow procedure Ubuntu from scratch. Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction. Docs \u00bb Document embedding using UMAP.<\/strong><\/p>\n<p><figure> \t\t<img decoding=\"async\" src=\"https:\/\/blog.readthedocs.com\/_images\/2019-text-only-ad.png\" alt=\"New Ad Format Coming to Read the Docs Community Sites \u2014 Read the Docs Blog\" style=\"width: 100%; padding: 5px; background-color: grey;\"><figcaption>New Ad Format Coming to Read the Docs Community Sites \u2014 Read the Docs Blog (Lottie Washington)<\/figcaption><\/figure>\n<p> \t \t<strong>Umap Read The Docs<\/strong>. <strong>Create a virtual environment. virtualenv umap source umap\/bin\/activate. Default Version. latest &#39;latest&#39; Version. develop. This is a tutorial of using UMAP to embed text (but this can be extended to any collection of tokens). Based on feedback from a helpful user, I eventually arrived at a less hack&#39;y solution. A umap file contains map data.<\/strong> Umap Read The Docs. <\/p>\n<h3>Built with MkDocs using a theme provided by Read the Docs.<\/h3>\n<p>Note: for Ubuntu follow procedure Ubuntu from scratch.<\/p>\n<div style=\"display: grid;grid-template-columns: auto auto auto; background: #eee; \">\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/umap-learn.readthedocs.io\/en\/latest\/_images\/basic_usage_24_2.png\"><img decoding=\"async\" src=\"https:\/\/umap-learn.readthedocs.io\/en\/latest\/_images\/basic_usage_24_2.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse4.mm.bing.net\/th?id=OIP.NuSIGLqPsA4xTQTqKfgkkQHaHH&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>How to Use UMAP \u2014 umap 0.5 documentation<\/p>\n<\/p><\/div>\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/umap-learn.readthedocs.io\/en\/0.4dev\/_images\/BasicUsage_20_1.png\"><img decoding=\"async\" src=\"https:\/\/umap-learn.readthedocs.io\/en\/0.4dev\/_images\/BasicUsage_20_1.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse1.mm.bing.net\/th?id=OIP._m_f4VcThfB6rfGK9VcQpgHaHC&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>How to Use UMAP \u2014 umap 0.3 documentation<\/p>\n<\/p><\/div>\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/i.stack.imgur.com\/pMdI0.png\"><img decoding=\"async\" src=\"https:\/\/i.stack.imgur.com\/pMdI0.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse1.mm.bing.net\/th?id=OIP.gT0Jq-th0FGwxm_MK6rr6wHaFe&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>python &#8211; Read The Docs build failing without errors? &#8211; Stack Overflow<\/p>\n<\/p><\/div>\n<\/p><\/div>\n<div style=\"display: grid;grid-template-columns: auto auto auto; background: #eee; \">\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/images.squarespace-cdn.com\/content\/v1\/5bc760564d546e3f72b825c1\/1559078257220-6ALFZ3RRY6ZEBK35IWXB\/ke17ZwdGBToddI8pDm48kEEaAbLwaeOh7y3KI2n-miMUqsxRUqqbr1mOJYKfIPR7LoDQ9mXPOjoJoqy81S2I8N_N4V1vUb5AoIIIbLZhVYxCRW4BPu10St3TBAUQYVKcv3qxysUJK61UPuAxqlm8xz0kLM8PwE6F1TbPJAEL3mpCuplMLbxd4eqVxebPnx3G\/Screen+Shot+2019-05-23+at+11.31.16+AM.png\"><img decoding=\"async\" src=\"https:\/\/images.squarespace-cdn.com\/content\/v1\/5bc760564d546e3f72b825c1\/1559078257220-6ALFZ3RRY6ZEBK35IWXB\/ke17ZwdGBToddI8pDm48kEEaAbLwaeOh7y3KI2n-miMUqsxRUqqbr1mOJYKfIPR7LoDQ9mXPOjoJoqy81S2I8N_N4V1vUb5AoIIIbLZhVYxCRW4BPu10St3TBAUQYVKcv3qxysUJK61UPuAxqlm8xz0kLM8PwE6F1TbPJAEL3mpCuplMLbxd4eqVxebPnx3G\/Screen+Shot+2019-05-23+at+11.31.16+AM.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse4.mm.bing.net\/th?id=OIP.5mnNnFZjbRelX-y_3VYY3AHaFW&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>The UMAP Plugin in FlowJo: A User&#39;s Review \u2014 The Clambey Lab<\/p>\n<\/p><\/div>\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/raw.github.com\/SolutionsCloud\/apidoc\/master\/docs\/source\/_static\/screenshot_sample.png\"><img decoding=\"async\" src=\"https:\/\/raw.github.com\/SolutionsCloud\/apidoc\/master\/docs\/source\/_static\/screenshot_sample.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse4.mm.bing.net\/th?id=OIP.nNaengaA5D-Q_pHOeCbxqwHaDj&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>ApiDoc \u00b7 PyPI<\/p>\n<\/p><\/div>\n<div style=\"padding: 1em;\"> \t\t        <a href=\"http:\/\/www.scikit-yb.org\/en\/latest\/_images\/umap_cosine.png\"><img decoding=\"async\" src=\"http:\/\/www.scikit-yb.org\/en\/latest\/_images\/umap_cosine.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse3.mm.bing.net\/th?id=OIP.q1YPmZMM4maTs5Aies6SWQHaFF&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>UMAP Corpus Visualization \u2014 Yellowbrick v1.2 documentation<\/p>\n<\/p><\/div>\n<\/p><\/div>\n<div style=\"display: grid;grid-template-columns: auto auto auto; background: #eee; \">\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/www.researchgate.net\/profile\/Stephane_Boutet\/publication\/333087722\/figure\/download\/fig5\/AS:758448312569859@1557839577842\/Integration-of-sc-snRNA-seq-methods-UMAP-visualization-of-cells-after-integrating.png\"><img decoding=\"async\" src=\"https:\/\/www.researchgate.net\/profile\/Stephane_Boutet\/publication\/333087722\/figure\/download\/fig5\/AS:758448312569859@1557839577842\/Integration-of-sc-snRNA-seq-methods-UMAP-visualization-of-cells-after-integrating.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse3.mm.bing.net\/th?id=OIP.QgLFHoHkUJhAL_Q0kETJewHaFu&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>Integration of sc\/snRNA-seq methods. UMAP visualization of cells after &#8230;<\/p>\n<\/p><\/div>\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/fd.io\/docs\/vpp\/v2101\/_images\/buildVerRTD.png\"><img decoding=\"async\" src=\"https:\/\/fd.io\/docs\/vpp\/v2101\/_images\/buildVerRTD.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse4.mm.bing.net\/th?id=OIP.d3_fm8vY0vxotyQl1aJu2gHaFO&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>Read The Docs \u2014 The Vector Packet Processor 20.01 documentation<\/p>\n<\/p><\/div>\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/i.stack.imgur.com\/eu7iI.png\"><img decoding=\"async\" src=\"https:\/\/i.stack.imgur.com\/eu7iI.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse2.mm.bing.net\/th?id=OIP.HUrvQA6-G7CPAL7wJYy1FAHaEK&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>How to resolve the error, &#34;module umap has no attribute UMAP&#34;.. I tried &#8230;<\/p>\n<\/p><\/div>\n<\/p><\/div>\n<div style=\"display: grid;grid-template-columns: auto auto auto; background: #eee; \">\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/www.topbestalternatives.com\/wp-content\/screenshots\/read-the-docs-207927-1.jpg\"><img decoding=\"async\" src=\"https:\/\/www.topbestalternatives.com\/wp-content\/screenshots\/read-the-docs-207927-1.jpg\" onerror=\"this.onerror=null;this.src='https:\/\/tse2.mm.bing.net\/th?id=OIP.0S9NOYZxDMCigy4sJYuZOAHaG9&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>23 Read The Docs Alternatives &#8211; Top Best Alternatives<\/p>\n<\/p><\/div>\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/blog.readthedocs.com\/_images\/2019-text-only-ad.png\"><img decoding=\"async\" src=\"https:\/\/blog.readthedocs.com\/_images\/2019-text-only-ad.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse2.mm.bing.net\/th?id=OIP.vM3WuBbVRmvWXwI5GektFAHaFo&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>New Ad Format Coming to Read the Docs Community Sites \u2014 Read the Docs Blog<\/p>\n<\/p><\/div>\n<div style=\"padding: 1em;\"> \t\t        <a href=\"https:\/\/docs.flowjo.com\/wp-content\/uploads\/2021\/11\/image.png\"><img decoding=\"async\" src=\"https:\/\/docs.flowjo.com\/wp-content\/uploads\/2021\/11\/image.png\" onerror=\"this.onerror=null;this.src='https:\/\/tse3.mm.bing.net\/th?id=OIP.RWFqGFUR78Io3QJSuGbwFQHaG8&amp;pid=Api';\" style=\"width:100%;margin-top: 8px;vertical-align: middle;\"><\/a> \t\t        <\/p>\n<p>UMAP &#8211; FlowJo Documentation | FlowJo Documentation &#8211; Documentation for &#8230;<\/p>\n<\/p><\/div>\n<\/p><\/div>\n<p><strong>Umap Read The Docs<\/strong>. <strong>See Geodjango doc for backend installation. Problems with opening and working with UMAP files are most probably having to do with no proper software compatible with UMAP files being present on your machine. The data is uniformly distributed on Riemannian manifold; umap-learn First, it generates all possible k-mers of the genome. Note: for a Windows installation follow procedure Installing on Windows.<\/p>\n<p><\/strong> Umap Read The Docs.<\/p>\n<div class=\"387480d42754320bb6f0e83bf7886d44\" data-index=\"2\" style=\"float: none; margin:10px 0 10px 0; text-align:center;\">\n<script type=\"text\/javascript\">\r\n\tatOptions = {\r\n\t\t'key' : '4a1f1119f949a4af74d56b8a3af8b867',\r\n\t\t'format' : 'iframe',\r\n\t\t'height' : 250,\r\n\t\t'width' : 300,\r\n\t\t'params' : {}\r\n\t};\r\n\tdocument.write('<scr' + 'ipt type=\"text\/javascript\" src=\"http' + (location.protocol === 'https:' ? 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Note: for&#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/posts\/200"}],"collection":[{"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/comments?post=200"}],"version-history":[{"count":0,"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/posts\/200\/revisions"}],"wp:attachment":[{"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/media?parent=200"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/categories?post=200"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/w2.geleleger.nl\/wp-json\/wp\/v2\/tags?post=200"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}